← Part VI: Spectroscopy & Molecular Structure

Vibrational Spectroscopy

Infrared & Raman Spectroscopy: From Harmonic Oscillators to Molecular Fingerprints

Introduction

Vibrational spectroscopy probes the quantized vibrational motions of molecules and provides a direct window into molecular bonding, geometry, and dynamics. The two principal techniques β€” infrared (IR) absorption and Raman scattering β€” are complementary: IR spectroscopy measures the absorption of light when vibrational transitions change the molecule's electric dipole moment, while Raman spectroscopy detects inelastic scattering of light associated with changes in molecular polarizability.

Together, IR and Raman spectroscopy form the backbone of molecular characterization in chemistry, materials science, biology, and environmental monitoring. Every covalent bond vibrates at a characteristic frequency determined by the bond strength (force constant $k$) and the masses of the bonded atoms (reduced mass $\mu$). This classical picture, refined by quantum mechanics, yields the selection rules, overtone patterns, and rotational fine structure that make vibrational spectra so information-rich.

In this chapter we derive the quantum theory of vibrational spectroscopy from first principles: the harmonic and anharmonic (Morse) oscillator models, selection rules for IR and Raman transitions, rotation-vibration coupling that produces the characteristic P, Q, and R branches, and the normal-mode analysis of polyatomic molecules. We then explore applications ranging from functional group identification to atmospheric science.

Derivation 1: Quantum Harmonic Oscillator

The simplest model of a vibrating diatomic molecule treats the bond as a harmonic spring with potential energy $V(x) = \tfrac{1}{2}kx^2$, where $x = r - r_e$ is the displacement from equilibrium and $k$ is the force constant. The time-independent SchrΓΆdinger equation for this system is:

$-\frac{\hbar^2}{2\mu}\frac{d^2\psi}{dx^2} + \frac{1}{2}kx^2\psi = E\psi$

where $\mu$ is the reduced mass. We introduce the dimensionless coordinate $\xi = \alpha x$ with $\alpha = (\mu\omega/\hbar)^{1/2}$and $\omega = (k/\mu)^{1/2}$. The SchrΓΆdinger equation becomes:

$\frac{d^2\psi}{d\xi^2} + \left(\frac{2E}{\hbar\omega} - \xi^2\right)\psi = 0$

Define $\lambda = 2E/(\hbar\omega)$. For large $|\xi|$, the equation is dominated by the $\xi^2$ term, so $\psi \sim e^{-\xi^2/2}$. We therefore write $\psi(\xi) = H(\xi)\,e^{-\xi^2/2}$ and substitute to obtain Hermite's differential equation:

$H''(\xi) - 2\xi\,H'(\xi) + (\lambda - 1)H(\xi) = 0$

A power-series solution $H(\xi) = \sum_{n=0}^{\infty} a_n \xi^n$ yields the recurrence relation:

$a_{n+2} = \frac{2n + 1 - \lambda}{(n+1)(n+2)}\,a_n$

For the wavefunction to be normalizable, the series must terminate. This requires$\lambda = 2v + 1$ for some non-negative integer $v = 0, 1, 2, \ldots$, giving the celebrated energy eigenvalues:

$\boxed{E_v = \hbar\omega\!\left(v + \frac{1}{2}\right), \qquad v = 0, 1, 2, \ldots}$

The corresponding wavefunctions are products of a Hermite polynomial and a Gaussian envelope:

$\psi_v(\xi) = N_v\,H_v(\xi)\,e^{-\xi^2/2}, \qquad N_v = \left(\frac{\alpha}{\sqrt{\pi}\,2^v\,v!}\right)^{1/2}$

The first several Hermite polynomials are $H_0 = 1$, $H_1 = 2\xi$,$H_2 = 4\xi^2 - 2$, $H_3 = 8\xi^3 - 12\xi$. Each successive wavefunction has one more node, with even/odd $v$ giving even/odd parity.

Zero-Point Energy

Even in the ground state ($v = 0$), the molecule retains a minimum vibrational energy $E_0 = \tfrac{1}{2}\hbar\omega$, the zero-point energy (ZPE). This is a direct consequence of the Heisenberg uncertainty principle: confining the internuclear distance to a small region near $r_e$ necessitates a non-zero kinetic energy. For HCl, the ZPE is approximately 1482 cm$^{-1}$ ($\approx 0.18$ eV), which is chemically significant β€” it affects isotope effects, reaction barriers, and molecular stability.

Derivation 2: Selection Rules for IR and Raman

IR Absorption Selection Rule

The probability of a vibrational transition induced by infrared radiation is proportional to the square of the transition dipole moment:

$\mu_{v'v} = \langle v' | \hat{\mu} | v \rangle = \int_{-\infty}^{\infty} \psi_{v'}^*(x)\,\mu(x)\,\psi_v(x)\,dx$

We expand the dipole moment function as a Taylor series about the equilibrium position:

$\mu(x) = \mu_0 + \left(\frac{d\mu}{dx}\right)_0 x + \frac{1}{2}\left(\frac{d^2\mu}{dx^2}\right)_0 x^2 + \cdots$

The first term gives zero by orthogonality ($\langle v'|v\rangle = \delta_{v'v}$). The leading contribution comes from the linear term. Using the ladder operator result $x = \sqrt{\hbar/(2\mu\omega)}\,(\hat{a}^\dagger + \hat{a})$:

$\langle v' | x | v \rangle = \sqrt{\frac{\hbar}{2\mu\omega}}\left(\sqrt{v+1}\,\delta_{v',v+1} + \sqrt{v}\,\delta_{v',v-1}\right)$

IR Selection Rules (harmonic approximation):

$\boxed{\Delta v = \pm 1 \quad \text{and} \quad \left(\frac{d\mu}{dq}\right)_0 \neq 0}$

A vibrational mode is IR-active if and only if the vibration changes the molecular dipole moment. Homonuclear diatomics (H$_2$, N$_2$, O$_2$) are IR-inactive because their dipole moment is zero at all bond lengths.

Raman Scattering Selection Rule

Raman scattering arises from the modulation of the molecular polarizability $\alpha$by the vibration. The induced dipole in an oscillating electric field is:

$p_{\text{ind}} = \alpha\,E_0\cos(\omega_0 t)$

Expanding the polarizability about equilibrium:

$\alpha(q) = \alpha_0 + \left(\frac{d\alpha}{dq}\right)_0 q + \cdots$

Substituting $q(t) = q_0\cos(\omega_{\text{vib}}t)$ and using the product-to-sum identity:

$p_{\text{ind}} = \alpha_0 E_0\cos(\omega_0 t) + \frac{1}{2}\left(\frac{d\alpha}{dq}\right)_0 q_0 E_0\left[\cos((\omega_0 - \omega_{\text{vib}})t) + \cos((\omega_0 + \omega_{\text{vib}})t)\right]$

The first term is Rayleigh (elastic) scattering. The second and third terms give Stokes ($\omega_0 - \omega_{\text{vib}}$) and anti-Stokes ($\omega_0 + \omega_{\text{vib}}$) Raman scattering.

Raman Selection Rules:

$\boxed{\Delta v = \pm 1 \quad \text{and} \quad \left(\frac{d\alpha}{dq}\right)_0 \neq 0}$

A vibration is Raman-active if it changes the molecular polarizability. Symmetric stretches of homonuclear diatomics (which are IR-inactive) are Raman-active because the electron cloud expands and contracts, changing $\alpha$.

Mutual Exclusion Rule

For centrosymmetric molecules (those possessing an inversion centre $i$), a fundamental vibrational mode that is IR-active cannot be Raman-active, and vice versa. This is the mutual exclusion rule. The proof follows from symmetry: in a centrosymmetric molecule, the dipole moment $\mu$ is antisymmetric (ungerade) under inversion, while the polarizability tensor $\alpha$ is symmetric (gerade). A normal mode has definite parity. If it is gerade, then $(d\mu/dq)_0 = 0$ (IR-inactive) but $(d\alpha/dq)_0$ may be non-zero (Raman-active). If ungerade, the converse holds. Therefore, no fundamental can be simultaneously IR and Raman active. Examples include CO$_2$, C$_2$H$_2$, SF$_6$, and benzene.

Derivation 3: Anharmonic Oscillator β€” Morse Potential

Real molecular potentials are anharmonic: they are asymmetric about the minimum, with the repulsive wall rising more steeply than the attractive tail. The Morse potential captures these features with the form:

$\boxed{V(r) = D_e\!\left[1 - e^{-a(r - r_e)}\right]^2}$

Here $D_e$ is the well depth (measured from the minimum to the dissociation asymptote), $r_e$ is the equilibrium bond length, and $a$ controls the width of the well:

$a = \omega\sqrt{\frac{\mu}{2D_e}} = \sqrt{\frac{k}{2D_e}}$

The remarkable property of the Morse potential is that the SchrΓΆdinger equation can be solvedexactly. Introducing the substitution $z = 2\lambda\,e^{-a(r-r_e)}$where $\lambda = \sqrt{2\mu D_e}/(\hbar a)$, the radial equation transforms into the associated Laguerre equation. The exact energy eigenvalues are:

$\boxed{E_v = \hbar\omega\!\left(v + \frac{1}{2}\right) - \hbar\omega\,x_e\!\left(v + \frac{1}{2}\right)^2}$

where the anharmonicity constant is:

$x_e = \frac{\hbar\omega}{4D_e}$

Key consequences of anharmonicity:

  • Energy levels converge: The spacing decreases with increasing $v$, approaching zero near dissociation. The number of bound states is finite: $v_{\max} \approx 1/(2x_e) - 1/2$.
  • Overtones become allowed: Since the wavefunctions of the anharmonic oscillator are not pure Hermite-Gaussian functions, the strict$\Delta v = \pm 1$ selection rule breaks down. Transitions with $\Delta v = \pm 2, \pm 3, \ldots$ (overtones) acquire non-zero intensity, though each successive overtone is typically an order of magnitude weaker.
  • Combination bands: In polyatomic molecules, anharmonic coupling between modes allows combination bands where two or more modes are simultaneously excited ($\nu_i + \nu_j$).

The dissociation energy measured from the potential minimum is $D_e$, while the experimentally accessible quantity is $D_0 = D_e - E_0$, the dissociation energy from the ground vibrational state. Using the Morse model:

$D_e = \frac{\omega_e^2}{4\omega_e x_e} = \frac{\omega_e}{4x_e}$

For HCl: $\omega_e = 2990.95$ cm$^{-1}$, $\omega_e x_e = 52.82$ cm$^{-1}$, giving $D_e \approx 42\,300$ cm$^{-1}$ ($\approx 5.24$ eV) and a maximum of about 23 bound vibrational states.

Derivation 4: Rotation-Vibration Coupling

A real diatomic molecule vibrates and rotates simultaneously. The total energy depends on both quantum numbers $v$ and $J$. We start from the full rovibrational Hamiltonian:

$\hat{H} = -\frac{\hbar^2}{2\mu}\frac{d^2}{dr^2} + \frac{\hbar^2 J(J+1)}{2\mu r^2} + V(r)$

The rotational constant depends on the instantaneous bond length: $B(r) = \hbar^2/(2\mu r^2)$. As the molecule vibrates, the average value of $1/r^2$ differs from $1/r_e^2$. Taking the expectation value over the vibrational state $|v\rangle$ gives thevibrationally averaged rotational constant:

$B_v = B_e - \alpha_e\!\left(v + \frac{1}{2}\right) + \cdots$

where $B_e = \hbar/(4\pi c\mu r_e^2)$ is the equilibrium rotational constant and $\alpha_e$ is the rotation-vibration coupling constant (always positive for a Morse oscillator because larger $v$ means larger average bond length and smaller $B$). The combined energy expression is:

$\boxed{E_{v,J} = \omega_e\!\left(v + \tfrac{1}{2}\right) - \omega_e x_e\!\left(v + \tfrac{1}{2}\right)^2 + B_v J(J+1)}$

P, Q, and R Branches

For a rovibrational transition $v'' \to v'$ with $\Delta J = 0, \pm 1$, the transition frequencies for the fundamental band ($v = 0 \to 1$) are:

R branch ($\Delta J = +1$, $J = 0, 1, 2, \ldots$):

$\tilde{\nu}_R(J) = \tilde{\nu}_0 + (B_1 + B_0)(J + 1) + (B_1 - B_0)(J + 1)^2$

P branch ($\Delta J = -1$, $J = 1, 2, 3, \ldots$):

$\tilde{\nu}_P(J) = \tilde{\nu}_0 - (B_1 + B_0)J + (B_1 - B_0)J^2$

Q branch ($\Delta J = 0$):

$\tilde{\nu}_Q(J) = \tilde{\nu}_0 + (B_1 - B_0)J(J+1)$

where the band origin is $\tilde{\nu}_0 = \omega_e - 2\omega_e x_e$ (for the fundamental).

Since $B_1 < B_0$ (the bond lengthens upon vibrational excitation), the coefficient $(B_1 - B_0) < 0$. This means:

  • The R-branch lines converge at high $J$ (spacing decreases), eventually forming a band head.
  • The P-branch lines diverge (spacing increases with $J$).
  • There is a gap at $\tilde{\nu}_0$ because $J = 0 \to J = 0$ is forbidden for molecules without electronic angular momentum.

Q Branch and Molecular Angular Momentum

The Q branch ($\Delta J = 0$) appears only when the molecule has a component of electronic or vibrational angular momentum along the bond axis β€” for example in$\Pi$ or $\Delta$ electronic states, or in perpendicular bands of symmetric top molecules. For $\Sigma$-state diatomics like HCl, the Q branch is absent, leaving the characteristic "gap" at the band centre.

Derivation 5: Normal Modes of Polyatomic Molecules

A molecule of $N$ atoms has $3N$ degrees of freedom. Of these, 3 are translational and either 3 (nonlinear) or 2 (linear) are rotational. The remaining internal degrees of freedom are vibrational:

$\boxed{n_{\text{vib}} = \begin{cases} 3N - 6 & \text{(nonlinear)} \\ 3N - 5 & \text{(linear)} \end{cases}}$

The GF Matrix Method

Wilson's GF matrix method provides a systematic procedure for determining normal-mode frequencies from molecular geometry and force constants. The classical equations of motion for small vibrations are, in mass-weighted coordinates:

$2T = \dot{\mathbf{q}}^T \mathbf{G}^{-1} \dot{\mathbf{q}}, \qquad 2V = \mathbf{q}^T \mathbf{F}\, \mathbf{q}$

where $\mathbf{F}$ is the force constant matrix in internal coordinates and$\mathbf{G}$ is the kinetic energy matrix that encodes the molecular geometry and masses. The normal-mode frequencies are obtained by solving the secular equation:

$|\mathbf{GF} - \lambda\mathbf{I}| = 0, \qquad \lambda_k = 4\pi^2\nu_k^2$

The eigenvalues $\lambda_k$ give the squared frequencies, and the eigenvectors describe the atomic displacement patterns of each normal mode.

Application to H$_2$O

Water ($C_{2v}$ symmetry, $N = 3$) has $3(3) - 6 = 3$ normal modes. These can be classified by the irreducible representations of $C_{2v}$:

$\nu_1$ (A$_1$)

Symmetric stretch

3657 cm$^{-1}$

IR + Raman active

$\nu_2$ (A$_1$)

Bending mode

1595 cm$^{-1}$

IR + Raman active

$\nu_3$ (B$_2$)

Asymmetric stretch

3756 cm$^{-1}$

IR + Raman active

Since H$_2$O is noncentrosymmetric, the mutual exclusion rule does not apply, and all three modes are both IR and Raman active. The symmetric stretch and bend both belong to the totally symmetric representation A$_1$, while the asymmetric stretch transforms as B$_2$.

The force constant matrix in internal coordinates $(r_1, r_2, \theta)$ for the valence force field model takes the form:

$\mathbf{F} = \begin{pmatrix} f_r & f_{rr} & f_{r\theta} \\ f_{rr} & f_r & f_{r\theta} \\ f_{r\theta} & f_{r\theta} & f_\theta \end{pmatrix}$

where $f_r$ is the O–H stretching force constant ($\approx 8.45$ mdyn/Γ…),$f_\theta$ is the bending force constant ($\approx 0.76$ mdynΒ·Γ…),$f_{rr}$ is the stretch-stretch interaction constant, and $f_{r\theta}$ is the stretch-bend interaction constant. Solving $|\mathbf{GF} - \lambda\mathbf{I}| = 0$ yields frequencies in excellent agreement with experiment.

Applications

Functional Group Identification

The "fingerprint region" (600–1500 cm$^{-1}$) of an IR spectrum is unique to each molecule. Characteristic group frequencies provide rapid identification: O–H stretches near 3200–3600 cm$^{-1}$, C=O stretches near 1650–1750 cm$^{-1}$, N–H stretches near 3300–3500 cm$^{-1}$, and C≑N stretches near 2200 cm$^{-1}$. This makes IR spectroscopy an indispensable tool in organic chemistry and pharmaceutical quality control.

Atmospheric Greenhouse Gases

The greenhouse effect depends directly on vibrational spectroscopy. CO$_2$ absorbs strongly at 667 cm$^{-1}$ (bending mode) and 2349 cm$^{-1}$(asymmetric stretch) β€” both in the thermal IR window. H$_2$O vapour absorbs broadly across the IR. CH$_4$, N$_2$O, and CFCs have strong IR absorptions in atmospheric windows, making them potent greenhouse gases despite low concentrations. Satellite-borne IR spectrometers monitor these species globally.

Medical Breath Analysis

Exhaled breath contains hundreds of volatile organic compounds (VOCs) at ppb concentrations. Laser-based IR spectroscopy β€” including tunable diode laser absorption spectroscopy (TDLAS) and cavity-enhanced techniques β€” can detect biomarkers for diseases: acetone for diabetes, nitric oxide for asthma and airway inflammation, ammonia for kidney disease, and carbon monoxide for hemolytic conditions. These non-invasive diagnostics leverage the exquisite selectivity of rovibrational fingerprints.

Art Conservation

Raman and IR microspectroscopy are widely used in cultural heritage science for non-destructive analysis of pigments, binders, and varnishes in paintings and manuscripts. Each mineral pigment (vermilion, azurite, malachite) has a distinctive Raman spectrum. Portable Raman spectrometers allow in-situ analysis in museums and archaeological sites without sampling. Degradation products β€” metal soaps, oxalates β€” can be identified to guide restoration strategies.

Historical Context

1905

William Weber Coblentz published Investigations of Infra-Red Spectra, the first systematic catalog of infrared absorption spectra for over 130 organic and inorganic compounds. Working at Cornell with a rock-salt prism spectrometer and thermopile detector, Coblentz demonstrated that each compound had a unique IR "fingerprint" and identified characteristic absorption bands for functional groups β€” laying the experimental foundation for the entire field of IR spectroscopy.

1928

C. V. Raman and K. S. Krishnan observed the inelastic scattering of light by liquids, confirming the frequency-shifted scattered radiation predicted theoretically by Smekal (1923). Raman used focused sunlight through a blue-violet filter on liquid benzene and detected the colour-shifted scattered light visually. This discovery, for which Raman received the 1930 Nobel Prize in Physics, opened an entirely new spectroscopic technique complementary to IR absorption.

1945–

Gerhard Herzberg produced the definitive multi-volume treatise Molecular Spectra and Molecular Structure, which remains the standard reference. Herzberg's meticulous spectroscopic studies of diatomic and polyatomic molecules determined bond lengths, dissociation energies, and electronic structures with unprecedented accuracy. He received the 1971 Nobel Prize in Chemistry for "contributions to the knowledge of electronic structure and geometry of molecules, particularly free radicals."

Simulation: Morse Potential & Rovibrational Spectrum

The Python simulation below plots the Morse and harmonic potentials for HCl with their energy levels, compares the harmonic and anharmonic level spacings, generates the rovibrational stick spectrum showing P and R branches with Boltzmann-weighted intensities at 300 K, and displays the quantum harmonic oscillator wavefunctions (Hermite polynomials times Gaussian).

Vibrational Spectroscopy: Morse Potential & Rovibrational Spectrum of HCl

Python

Four-panel analysis: Morse vs harmonic potential with energy levels, anharmonic level spacing, P/R branch rovibrational spectrum, and harmonic oscillator wavefunctions.

vibrational_spectroscopy.py238 lines

Click Run to execute the Python code

Code will be executed with Python 3 on the server

Computation: Diatomic Vibrational Parameters

The Fortran program below computes vibrational frequencies, anharmonicity constants, dissociation energies, and rovibrational band parameters for eight diatomic molecules (HCl, HBr, HF, HI, CO, NO, N$_2$, O$_2$) using the Morse oscillator model. It also tabulates the detailed anharmonic energy levels for HCl up to the dissociation limit.

Diatomic Vibrational Spectroscopy Parameters

Fortran

Computes Morse oscillator parameters, transition frequencies (fundamental and overtones), dissociation energies, and rovibrational band structure for eight diatomic molecules.

vibrational_spectroscopy.f90141 lines

Click Run to execute the Fortran code

Code will be compiled with gfortran and executed on the server