3.3 Nutrients & Biogeochemical Cycles

Fueling Ocean Life

Marine nutrients are dissolved inorganic substances required for the growth of phytoplankton. The macronutrients—nitrogen (N), phosphorus (P), and silicon (Si)—limit primary production in most of the ocean. Micronutrients, especially iron (Fe), control productivity in vast High-Nutrient Low-Chlorophyll (HNLC) regions. The cycling of these elements through biological uptake, sinking, remineralization, and physical transport fundamentally shapes ocean ecosystems and the global carbon cycle.

Alfred Redfield's discovery that marine organic matter has a remarkably constant elemental ratio (C:N:P = 106:16:1) remains one of the most important findings in chemical oceanography, linking nutrient cycles to carbon sequestration and oxygen consumption throughout the ocean.

Macronutrients

Nitrogen (N)

Forms: NO₃⁻ (nitrate), NO₂⁻ (nitrite), NH₄⁺ (ammonium). Nitrate is the primary form used by phytoplankton. Deep ocean: ~30-40 mumol/kg. Surface: often <0.1 mumol/kg in oligotrophic gyres. Often the limiting nutrient in the open ocean.

Phosphorus (P)

Form: PO₄³⁻ (orthophosphate). Essential for ATP, DNA, cell membranes. Deep ocean: ~2-3 mumol/kg. Sometimes limiting in the Mediterranean and parts of the subtropical Atlantic. On geological timescales, P may be the ultimate limiting nutrient.

Silicon (Si)

Form: Si(OH)₄ (silicic acid). Required by diatoms for their silica frustules and by radiolarians. Deep ocean: ~100-170 mumol/kg. Limits diatom growth when depleted, allowing smaller phytoplankton to dominate.

Micronutrients (Fe, Zn, Mn)

Iron is needed for photosynthetic electron transport and nitrogen fixation. Dissolved Fe concentrations are vanishingly small (~0.1-1 nmol/kg). Sources: dust deposition, hydrothermal vents, continental margins. Limits production in 30% of the ocean.

The Redfield Ratio

Redfield (1934, 1958) discovered that the elemental composition of marine organic matter is remarkably constant, reflecting the average biochemical composition of phytoplankton:

$$\text{C}:\text{N}:\text{P} = 106:16:1$$

The extended Redfield ratio including oxygen consumed during remineralization:

$$(\text{CH}_2\text{O})_{106}(\text{NH}_3)_{16}(\text{H}_3\text{PO}_4) + 138\text{O}_2 \rightarrow 106\text{CO}_2 + 16\text{HNO}_3 + \text{H}_3\text{PO}_4 + 122\text{H}_2\text{O}$$

106

Carbon atoms

16

Nitrogen atoms

1

Phosphorus atom

Nutrient Profiles & Regeneration

Nutrient depth profiles show characteristic depletion at the surface (biological uptake) and enrichment at depth (remineralization of sinking organic matter). The vertical gradient is maintained by the biological pump working against physical mixing.

Surface (0-100 m)

Depleted by phytoplankton uptake. NO₃⁻ often <0.5 mumol/kg in subtropical gyres.

Nutricline (100-500 m)

Rapid increase coinciding with the pycnocline. Zone of active remineralization.

Deep (>1000 m)

High and relatively uniform. Accumulated from centuries of remineralization.

New vs Regenerated Production

The f-ratio quantifies the fraction of primary production supported by "new" nitrogen (nitrate from deep water) vs "regenerated" nitrogen (ammonium recycled in surface):

$$f = \frac{\rho_{\text{NO}_3}}{\rho_{\text{NO}_3} + \rho_{\text{NH}_4}}$$

$f \approx 0.1$ in oligotrophic gyres; $f \approx 0.5$ in upwelling regions

N* Tracer, Nitrogen Fixation & Denitrification

The N* tracer identifies deviations from the expected Redfield N:P ratio, revealing regions of nitrogen fixation (N* > 0) and denitrification (N* < 0):

$$N^* = [\text{NO}_3^-] - 16 \times [\text{PO}_4^{3-}] + 2.9$$

Units: mumol/kg. The constant 2.9 is chosen so the global mean N* = 0.

Nitrogen Fixation

Diazotrophs like Trichodesmium convert N₂ gas to NH₄⁺ using nitrogenase enzyme. Requires Fe and Mo. Adds ~140 Tg N/yr to the ocean. Most active in warm, oligotrophic waters. Produces positive N* anomalies.

Denitrification

In suboxic zones (O₂ < 5 mumol/kg), microbes use NO₃⁻ as electron acceptor: NO₃⁻ to N₂. Removes ~200-400 Tg N/yr. Major sites: OMZs in the Arabian Sea, eastern tropical Pacific, and sediments. Produces negative N* anomalies.

Iron Hypothesis (Martin, 1990)

John Martin proposed that iron limits phytoplankton growth in HNLC regions (Southern Ocean, subarctic Pacific, equatorial Pacific). Iron fertilization experiments (IronEx, SOIREE, SOFeX) confirmed massive phytoplankton blooms following iron addition, validating the hypothesis that iron availability controls the efficiency of the biological pump.

Silica Cycle & HNLC Regions

The silica cycle is unique because dissolution of biogenic silica (opal) occurs throughout the water column but is strongly temperature-dependent. Unlike N and P, Si has no gaseous phase. The dissolution kinetics follow:

$$\frac{d[\text{Si(OH)}_4]}{dt} = k_{\text{diss}} \cdot (C_{\text{eq}} - [\text{Si(OH)}_4]) \cdot A$$

where $k_{\text{diss}}$ is the dissolution rate constant, $C_{\text{eq}}$ is the equilibrium concentration, and $A$ is the opal surface area.

Southern Ocean

HNLC: high Si, N, P but low Fe limits growth

Subarctic Pacific

HNLC: Fe limitation despite abundant macronutrients

Equatorial Pacific

HNLC: upwelling provides N, P but insufficient Fe

The Phosphorus Cycle & Long-Term Limitation

On geological timescales (millions of years), phosphorus may be the ultimate limiting nutrient because it has no significant gaseous phase—unlike nitrogen, which can be fixed from the atmosphere. The oceanic phosphorus budget is:

$$\frac{d[\text{P}]_{\text{ocean}}}{dt} = F_{\text{river}} + F_{\text{dust}} - F_{\text{burial}} - F_{\text{hydrothermal}}$$

River input ~0.1 Tg P/yr. Residence time of dissolved P: ~20,000-80,000 years.

Phosphorus is removed by burial in sediments (organic P and apatite formation) and by adsorption onto iron oxides in hydrothermal plumes. The P cycle regulates the long-term carbon cycle: increased P input (from weathering during warm periods) stimulates productivity, draws down CO₂, and leads to cooling—a negative feedback on climate.

Derivation: Redfield Ratio Stoichiometry

Step 1: Average Elemental Composition of Marine Organic Matter

Redfield (1934) analyzed the elemental composition of marine plankton and dissolved nutrients in seawater. He found that the molar ratios of C, N, and P in marine organic matter are remarkably constant. We write the generalized formula for marine organic matter as:

$$(\text{CH}_2\text{O})_a (\text{NH}_3)_b (\text{H}_3\text{PO}_4)_c$$

Step 2: Determine Stoichiometric Coefficients from Observations

From thousands of measurements of dissolved nutrient drawdown during photosynthesis and regeneration during remineralization, the observed consumption ratios give:

$$\frac{\Delta[\text{NO}_3^-]}{\Delta[\text{PO}_4^{3-}]} \approx 16, \quad \frac{\Delta[\text{CO}_2]}{\Delta[\text{PO}_4^{3-}]} \approx 106$$

Step 3: Oxygen Demand from Complete Remineralization

To find the O₂ consumed during complete oxidation of organic matter, we balance the redox reaction. Oxidizing one mole of carbohydrate (CH₂O) requires one O₂. Oxidizing NH₃ to HNO₃ requires 2 O₂ per NH₃. The total oxygen demand is:

$$\Delta \text{O}_2 = 106 \times 1 + 16 \times 2 = 106 + 32 = 138 \text{ mol O}_2$$

Step 4: The Complete Redfield Equation

Combining all terms, the stoichiometrically balanced equation for photosynthesis (forward) and remineralization (reverse) is:

$$106\text{CO}_2 + 16\text{HNO}_3 + \text{H}_3\text{PO}_4 + 122\text{H}_2\text{O} \underset{\text{respiration}}{\overset{\text{photosynthesis}}{\rightleftharpoons}} (\text{CH}_2\text{O})_{106}(\text{NH}_3)_{16}\text{H}_3\text{PO}_4 + 138\text{O}_2$$

Step 5: Verify Water Balance

We verify by counting hydrogen and oxygen atoms on both sides. On the left: 122 H₂O provides 244 H atoms. CO₂ contributes 212 O atoms. On the right: 106 CH₂O contains 212 H and 106 O; NH₃ contributes 48 H; 138 O₂ provides 276 O. Balancing confirms the 122 H₂O coefficient and the C:N:P:O₂ = 106:16:1:138 ratio.

$$\boxed{\text{C}:\text{N}:\text{P}:\text{-O}_2 = 106:16:1:138}$$

Derivation: Nutrient Regeneration Rate Equations

Step 1: First-Order Remineralization Kinetics

Particulate organic matter (POM) sinking through the water column is decomposed by heterotrophic bacteria. The rate of organic matter decay follows first-order kinetics with respect to the organic matter concentration:

$$\frac{d[\text{POM}]}{dt} = -k_{\text{remin}} \cdot [\text{POM}]$$

Step 2: Solve the ODE for Exponential Decay

Separating variables and integrating from the initial concentration at export depth z₀:

$$\int_{[\text{POM}]_0}^{[\text{POM}]} \frac{d[\text{POM}]}{[\text{POM}]} = -k_{\text{remin}} \int_0^t dt \quad \Rightarrow \quad [\text{POM}](t) = [\text{POM}]_0 \cdot e^{-k_{\text{remin}} t}$$

Step 3: Convert Time to Depth Using Sinking Speed

For a particle sinking at velocity w, the time to reach depth z is t = (z - z₀)/w. Substituting yields the Martin curve (power-law flux attenuation):

$$F(z) = F(z_0) \cdot \left(\frac{z}{z_0}\right)^{-b}$$

where b ≈ 0.858 (Martin et al., 1987). This arises when the remineralization rate and sinking speed both vary with particle size and composition.

Step 4: Nutrient Release Rate from Redfield Coupling

Using the Redfield ratio, the rate of nutrient regeneration is coupled to carbon remineralization. For nitrogen and phosphorus regeneration:

$$\frac{d[\text{NO}_3^-]}{dt} = \frac{16}{106} \cdot k_{\text{remin}} \cdot [\text{POC}], \qquad \frac{d[\text{PO}_4^{3-}]}{dt} = \frac{1}{106} \cdot k_{\text{remin}} \cdot [\text{POC}]$$

Step 5: Apparent Oxygen Utilization (AOU) Connection

The oxygen consumed during remineralization (AOU) is related to nutrient regeneration through Redfield stoichiometry. This allows estimation of regenerated nutrients from oxygen measurements:

$$\text{AOU} = [\text{O}_2]_{\text{sat}} - [\text{O}_2]_{\text{obs}} = \frac{138}{16}\,\Delta[\text{NO}_3^-] = 138\,\Delta[\text{PO}_4^{3-}]$$

Python: Redfield Analysis & Nutrient Profiles

Python: Redfield Analysis & Nutrient Profiles

Python

!/usr/bin/env python3

script.py59 lines

Click Run to execute the Python code

Code will be executed with Python 3 on the server

Fortran: Nutrient-Phytoplankton-Zooplankton (NPZ) Model

Fortran: Nutrient-Phytoplankton-Zooplankton (NPZ) Model

Fortran

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program.f9066 lines

Click Run to execute the Fortran code

Code will be compiled with gfortran and executed on the server

Key Takeaways

  • The Redfield ratio C:N:P = 106:16:1 links nutrient, carbon, and oxygen cycles throughout the ocean.
  • Nutrient profiles show surface depletion (uptake) and deep enrichment (remineralization).
  • N* identifies regions of nitrogen fixation (positive) and denitrification (negative).
  • Iron limits productivity in HNLC regions, validating Martin's iron hypothesis.
  • The f-ratio distinguishes new production (nitrate-based) from regenerated production (ammonium-based).