Pathway Analysis

Genomics, Proteomics, Transcriptomics & Metabolomics · Part 4

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Table of Contents

  1. 1.1. Metabolic Pathway Mapping
  2. 2.2. Metabolic Flux Analysis (MFA)
  3. 3.3. Flux Balance Analysis (FBA)
  4. 4.4. Metabolic Control Analysis (MCA)
  5. 5.5. Thermodynamic Feasibility & Dynamic Metabolomics
  6. 6.6. Metabolic Network Topology
  7. 7.Pathway Enrichment Analysis
  8. 8.Hypergeometric Test for ORA
  9. 9.Major Pathway Databases
  10. 10.Isotopomer Balance Equations

Key Equations

$$P(X \geq k) = 1 - \sum_{i=0}^{k-1} \frac{\binom{m}{i}\binom{N-m}{n-i}}{\binom{N}{n}}$$
$$\max_{\mathbf{v}} \quad \mathbf{c}^T \cdot \mathbf{v}$$
$$\sum_{i=1}^{n} C_i^J = 1$$
$$\sum_{i=1}^{n} C_i^J \cdot \varepsilon_{S_j}^{v_i} = 0$$

Equations are rendered with MathJax in the PDF with professional LaTeX typesetting.

Course Context

This PDF is part of the Genomics, Proteomics, Transcriptomics & Metabolomics course on CoursesHub.World. Study genomics, proteomics, transcriptomics and metabolomics with 20 free chapters covering DNA sequencing, RNA-Seq, mass spectrometry, metabolic profiling, multi-omics integration, and precision medi...

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